GitHub

rehan-trq/MPI-Based-solution-to-compute-Distance-Matrix-for-Multiple-Sequence-Alignment-MSA-

This project implements a parallel algorithm using MPI to compute a distance matrix for Multiple Sequence Alignment (MSA). It draws inspiration from progressive alignment strategies used in tools like ...
IEEE

Pairwise Statistical Significance of Local Sequence Alignment Using Substitution Matrices with Sequence-Pair-Specific Distance

Abstract: Pairwise sequence alignment forms the basis of numerous other applications in bioinformatics. The quality of an alignment is gauged by statistical significance rather than by alignment score ...
GitHub

FISHnet - a graph theory approach for calling chromatin domains in sequential Oligopaints data

FISHnet is graph theory method to detect chromatin domains and boundaries in pairwise distance matrices from sequential Oligopaints data. FISHnet uses various distance thresholds as a resolution ...
IEEE

Scalable Hamming Distance Computation Using Accelerated Matrix Transformations

Abstract: The Hamming distance, a fundamental measure of dissimilarity between data points, plays a crucial role in various fields, including error detection, machine ...
JSTOR Daily

Matrix transforms between sequence spaces defined by speeds of convergence

Let X, Y be two sequence spaces defined by speeds of the convergence, i.e.; by monotonically increasing positive sequences. In this paper, we give necessary and sufficient conditions for a matrix A ...
JSTOR Daily

Comparative Study of Melange Matrix and Metashales from the Franciscan Subduction Complex With the Basal Great Valley Sequence, California

The central belt of the Franciscan subduction complex of California is largely a zone of pelitic-matrix melange bearing exotic blocks of blueschist and eclogite. In outcrop, the matrix appears to be a ...