Clustering 3K PBMCs with Scanpy - Galaxy Training Network
Dec 19, 2019 · Training material and practicals for all kinds of single cell analysis (particularly scRNA-seq!).
Inferring single cell trajectories with Scanpy
Dec 8, 2023 · Training material and practicals for all kinds of single cell analysis (particularly scRNA-seq!).
Filter, plot and explore single-cell RNA-seq data with Scanpy …
Aug 25, 2023 · Training material and practicals for all kinds of single cell analysis (particularly scRNA-seq!).
Inferring single cell trajectories with Scanpy (Python)
Apr 7, 2021 · Training material and practicals for all kinds of single cell analysis (particularly scRNA-seq!).
Analysis of plant scRNA-Seq Data with Scanpy
Apr 8, 2021 · Training material and practicals for all kinds of single cell analysis (particularly scRNA-seq!).
How do I create AnnData object from a pandas data frame count …
Dec 3, 2020 · I am trying to use the Scanpy Python package to analyze some single-cell data. I read a count matrix (a .tsv file) in as a Pandas data frame, which has genes as the columns and …
subsetting anndata on basis of louvain clusters - Stack Overflow
Sep 16, 2020 · I want to subset anndata on basis of clusters, but i am not able to understand how to do it. I am running scVelo pipeline, and in that i ran tl.louvain function to cluster cells on …
Newest 'scanpy' Questions - Stack Overflow
Oct 24, 2025 · I'm using scanpy/python to analyze some single-cell RNA-seq data. I want to use sc.pl.umap(show= False) in order to make ax objects, edit them, and combine them accordingly.
python - How to add an observation category on scanpy based on …
How to add an observation category on scanpy based on another observation? Asked 5 years, 2 months ago Modified 3 years, 10 months ago Viewed 17k times
python - How to change font size in scanpy - Stack Overflow
Sep 16, 2020 · I am generating dotplots using scanpy and unable to change the font size. Is there a way to do so? For example, how would I edit this line of code? sc.pl.dotplot(df, …
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